Export .ccmap as text fileΒΆ
Presently only COO list format is implemented in gcMapExplorer.ccmap.export_ccmap
function. In COO format, lists of (row, column, value) as three tab seprated columns are written in output file.
See also
Module gcMapExplorer.ccmap.export_ccmap()
[1]:
import gcMapExplorer.lib as gmlib
[2]:
# Input files and path
inputPath='normalized/'
files= ['chr5_100kb_normKR.ccmap', 'chr15_100kb_normKR.ccmap',
'chr20_100kb_normKR.ccmap', 'chr21_100kb_normKR.ccmap']
#Output files and path
outputPath = 'export/'
outputs=['chr5_100kb.txt', 'chr15_100kb.txt', 'chr20_100kb.txt', 'chr21_100kb.txt']
for i, o in zip(files, outputs):
ccmap = gmlib.ccmap.load_ccmap(inputPath+i)
gmlib.ccmap.export_cmap(ccmap, outputPath+o, doNotWriteZeros=True)