Export .ccmap as text fileΒΆ
Presently only COO list
format
is implemented in gcMapExplorer.ccmap.export_ccmap
function. In COO
format, lists of (row, column, value) as three tab seprated columns are
written in output file.
See also
Module gcMapExplorer.ccmap.export_ccmap()
In [1]:
from gcMapExplorer.lib import ccmap as cmp
In [2]:
# Input files and path
inputPath='output/CooMatrix/normalized/'
files= ['chr5_100kb_normKR.ccmap', 'chr15_100kb_normKR.ccmap',
'chr20_100kb_normKR.ccmap', 'chr21_100kb_normKR.ccmap']
#Output files and path
outputPath = 'export/'
outputs=['chr5_100kb.txt', 'chr15_100kb.txt', 'chr20_100kb.txt', 'chr21_100kb.txt']
for i, o in zip(files, outputs):
ccmap = cmp.load_ccmap(inputPath+i)
cmp.export_ccmap(ccmap, outputPath+o, doNotWriteMinimum=True)