Genome Contact Map Explorer - gcMapExplorer
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  • Requirements and Installation
  • How to use gcMapExplorer?
  • Genome Contact Map Browser
  • About file formats
  • Normalization of Hi-C maps
  • Frequently asked questions
  • Download example datasets
  • Summary of Python Modules
  • Examples using Python Modules
    • How to Import external Hi-C map data?
    • How to normalize Hi-C map?
    • How to access Hi-C data from ccmap file?
    • Using masked array with Hi-C map
    • How to export Hi-C data as text file?
    • How to access map from gcmap file?
    • Comparison - original KR algorithm and implemented method
    • Comparison - original ICE algorithm and implemented method
  • Python Modules documentation
Genome Contact Map Explorer - gcMapExplorer
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  • Contents
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ContentsΒΆ

Please download tutorial files here.

  • How to Import external Hi-C map data?
  • How to normalize Hi-C map?
  • How to access Hi-C data from ccmap file?
  • Using masked array with Hi-C map
  • How to export Hi-C data as text file?
  • How to access map from gcmap file?
  • Comparison - original KR algorithm and implemented method
  • Comparison - original ICE algorithm and implemented method
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© Copyright 2016-2017, Rajendra Kumar, Ludvig Lizana, Per Stenberg Revision 58653b4f.

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